Pairwise fitting pdb-4v47 on emdb-1064 by gmfit










Pairwise fitting of target pdb-4v47 on reference emdb-1064 by gmfit(PID:4116069).





RANK[1] Corr.Coeff:0.684

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v47)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v47)]







REFERENCE(emdb-1064)

display:



color:


Visualization of release factor 3 on the ribosome during termination of protein synthesis. [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.684
0.623
0.594
0.592
0.592
0.589
0.583
0.580
0.574
0.573







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1064.map.gz", and read it.

  2.  Download the Target molecule "4v47"(PDB-format) or
  "4v47"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.597048,-0.508900,0.620125 162.182317 center 0,0,0 model #1
move -3.914658,-0.667004,-2.344073 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1064)]

[Download the target GMM(pdb 4v47)]

[Download gmfit result file(4116069)]