Pairwise fitting pdb-3j0f on pdb-4bml by gmfit



Pairwise fitting of target pdb-3j0f on reference pdb-4bml by gmfit(PID:4112556).

RANK[1] Corr.Coeff:0.333 [JSmol] [Molmil]
TARGET(pdb-3j0f)
display:
color:
b'SINDBIS VIRION ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3j0f)]
REFERENCE(pdb-4bml)
display:
color:
b'C-ALPHA BACKBONE TRACE OF MAJOR CAPSID PROTEIN GP39 FOUND IN MARINE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.333 0.289 0.283 0.279 0.277 0.276 0.275 0.270 0.270 0.252

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4bml"(PDB-format) or "4bml"(mmCIF-format), and read it.
  2. Download the Target molecule "3j0f"(PDB-format) or "3j0f"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.423456,0.663672,0.616624 112.427960 center 0,0,0 model #1
    move -208.483192,-331.758330,189.883525 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4bml)] [Download the target GMM(pdb 3j0f)] [Download gmfit result file(4112556)]