Pairwise fitting pdb-3j0f on pdb-4bml by gmfit










Pairwise fitting of target pdb-3j0f on reference pdb-4bml by gmfit(PID:4112556).





RANK[1] Corr.Coeff:0.333

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(pdb-4bml)

display:



color:


b'C-ALPHA BACKBONE TRACE OF MAJOR CAPSID PROTEIN GP39 FOUND IN MARINE   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.333
0.289
0.283
0.279
0.277
0.276
0.275
0.270
0.270
0.252







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4bml"(PDB-format) or 
 "4bml"(mmCIF-format), and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.423456,0.663672,0.616624 112.427960 center 0,0,0 model #1
move -208.483192,-331.758330,189.883525 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4bml)]

[Download the target GMM(pdb 3j0f)]

[Download gmfit result file(4112556)]