Pairwise fitting pdb-3j0f on pdb-3jba by gmfit










Pairwise fitting of target pdb-3j0f on reference pdb-3jba by gmfit(PID:4102978).





RANK[1] Corr.Coeff:0.433

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(pdb-3jba)

display:



color:


b'THE U4 ANTIBODY EPITOPE ON HUMAN PAPILLOMAVIRUS 16 IDENTIFIED BY CRYO-' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.433
0.323
0.304
0.302
0.294
0.290
0.288
0.285
0.282
0.277







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jba"(PDB-format) or 
 "3jba"(mmCIF-format), and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.074298,-0.424893,0.902189 83.534899 center 0,0,0 model #1
move 203.361910,6.483543,10.697206 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3jba)]

[Download the target GMM(pdb 3j0f)]

[Download gmfit result file(4102978)]