Pairwise fitting pdb-3j0f on pdb-3jba by gmfit



Pairwise fitting of target pdb-3j0f on reference pdb-3jba by gmfit(PID:4126318).

RANK[1] Corr.Coeff:0.433 [JSmol] [Molmil]
TARGET(pdb-3j0f)
display:
color:
b'SINDBIS VIRION ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3j0f)]
REFERENCE(pdb-3jba)
display:
color:
b'THE U4 ANTIBODY EPITOPE ON HUMAN PAPILLOMAVIRUS 16 IDENTIFIED BY CRYO-' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.433 0.323 0.304 0.302 0.294 0.290 0.288 0.285 0.282 0.277

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3jba"(PDB-format) or "3jba"(mmCIF-format), and read it.
  2. Download the Target molecule "3j0f"(PDB-format) or "3j0f"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.074298,-0.424893,0.902189 83.534899 center 0,0,0 model #1
    move 203.361910,6.483543,10.697206 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3jba)] [Download the target GMM(pdb 3j0f)] [Download gmfit result file(4126318)]