Pairwise fitting pdb-3j0f on pdb-3ddx by gmfit










Pairwise fitting of target pdb-3j0f on reference pdb-3ddx by gmfit(PID:4060424).





RANK[1] Corr.Coeff:0.431

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(pdb-3ddx)

display:



color:


b'HK97 BACTERIOPHAGE CAPSID EXPANSION INTERMEDIATE-II MODEL             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.431
0.276
0.275
0.263
0.259
0.247
0.235
0.229
0.226
0.221







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3ddx"(PDB-format) or 
 "3ddx"(mmCIF-format), and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.254100,-0.260516,-0.931431 160.859084 center 0,0,0 model #1
move -13.384298,-1.409568,-21.069563 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3ddx)]

[Download the target GMM(pdb 3j0f)]

[Download gmfit result file(4060424)]