Pairwise fitting pdb-3j0f on pdb-2xyz by gmfit










Pairwise fitting of target pdb-3j0f on reference pdb-2xyz by gmfit(PID:15480).





RANK[1] Corr.Coeff:0.358

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(pdb-2xyz)

display:



color:


b'DE NOVO MODEL OF BACTERIOPHAGE P22 VIRION COAT PROTEIN                ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.358
0.315
0.310
0.309
0.306
0.290
0.290
0.271
0.270
0.269







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2xyz"(PDB-format) or 
 "2xyz"(mmCIF-format), and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.922049,-0.332721,0.197793 132.896412 center 0,0,0 model #1
move -28.082710,155.060243,351.400108 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 2xyz)]

[Download the target GMM(pdb 3j0f)]

[Download gmfit result file(15480)]