Pairwise fitting pdb-3j0f on emdb-2487 by gmfit



Pairwise fitting of target pdb-3j0f on reference emdb-2487 by gmfit(PID:4101580).

RANK[1] Corr.Coeff:0.394 [JSmol] [Molmil]
TARGET(pdb-3j0f)
display:
color:
b'SINDBIS VIRION ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3j0f)]
REFERENCE(emdb-2487)
display:
color:
Determination of protein structure at 8.5 Angstrom resolution using cryo-electron microscopy and subtomogram averaging [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.394 0.392 0.368 0.356 0.345 0.343 0.339 0.338 0.334 0.324

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2487.map.gz", and read it.
  2. Download the Target molecule "3j0f"(PDB-format) or "3j0f"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.710822,0.302103,0.635190 162.009363 center 0,0,0 model #1
    move -143.169875,96.361750,85.386474 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2487)] [Download the target GMM(pdb 3j0f)] [Download gmfit result file(4101580)]