Pairwise fitting pdb-3j0f on emdb-2305 by gmfit










Pairwise fitting of target pdb-3j0f on reference emdb-2305 by gmfit(PID:280035).





RANK[1] Corr.Coeff:0.419

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(emdb-2305)

display:



color:


Structural visualization of key steps in human transcription initiation [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.419
0.364
0.344
0.325
0.318
0.316
0.312
0.300
0.294
0.293







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2305.map.gz", and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.516792,-0.701972,-0.490062 131.246966 center 0,0,0 model #1
move 190.168395,-57.118973,189.695707 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!