Pairwise fitting pdb-3j0f on emdb-1741 by gmfit










Pairwise fitting of target pdb-3j0f on reference emdb-1741 by gmfit(PID:643684).





RANK[1] Corr.Coeff:0.488

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

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b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(emdb-1741)

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Pyruvate carboxylase from S. aureus after addition of acetyl-CoA, AMP-PNP, KHCO3 and oxaloacetate (total map prior to maximum likekihood based classification) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.488
0.414
0.411
0.404
0.397
0.386
0.384
0.380
0.377
0.374







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1741.map.gz", and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.989933,0.115949,0.081170 172.470926 center 0,0,0 model #1
move 158.572476,203.700014,441.501298 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!