Pairwise fitting pdb-3j0f on emdb-1319 by gmfit










Pairwise fitting of target pdb-3j0f on reference emdb-1319 by gmfit(PID:140206).





RANK[1] Corr.Coeff:0.467

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

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b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(emdb-1319)

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Octomeric pyruvate-ferredoxin oxidoreductase from Desulfovibrio vulgaris. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.467
0.451
0.426
0.424
0.420
0.417
0.417
0.417
0.410
0.409







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1319.map.gz", and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.578578,-0.340852,0.740991 174.791221 center 0,0,0 model #1
move 218.541841,140.296680,61.293592 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1319)]

[Download the target GMM(pdb 3j0f)]

[Download gmfit result file(140206)]