Pairwise fitting pdb-3j0f on emdb-1208 by gmfit










Pairwise fitting of target pdb-3j0f on reference emdb-1208 by gmfit(PID:17600).





RANK[1] Corr.Coeff:0.533

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(emdb-1208)

display:



color:


Three-dimensional structure of the human DNA-PKcs/Ku70/Ku80 complex assembled on DNA and its implications for DNA DSB repair. [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.533
0.447
0.434
0.403
0.379
0.341
0.335
0.335
0.334
0.315







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1208.map.gz", and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.615735,-0.125415,0.777909 149.645925 center 0,0,0 model #1
move 264.071002,-11.473914,15.402014 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1208)]

[Download the target GMM(pdb 3j0f)]

[Download gmfit result file(17600)]