Pairwise fitting pdb-3j0f on emdb-1020 by gmfit










Pairwise fitting of target pdb-3j0f on reference emdb-1020 by gmfit(PID:4188200).





RANK[1] Corr.Coeff:0.397

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

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b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(emdb-1020)

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Structure of a viral DNA gatekeeper at 10 A resolution by cryo-electron microscopy. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.397
0.364
0.334
0.326
0.309
0.299
0.293
0.289
0.282
0.276







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1020.map.gz", and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.864888,-0.370263,0.338932 90.091988 center 0,0,0 model #1
move 122.742009,340.991915,-14.147169 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1020)]

[Download the target GMM(pdb 3j0f)]

[Download gmfit result file(4188200)]