Pairwise fitting pdb-3izd on pdb-1zo1 by gmfit










Pairwise fitting of target pdb-3izd on reference pdb-1zo1 by gmfit(PID:4060972).





RANK[1] Corr.Coeff:0.375

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(pdb-1zo1)

display:



color:


b'IF2, IF1, AND TRNA FITTED TO CRYO-EM DATA OF E. COLI 70S INITIATION   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.375
0.360
0.332
0.292
0.285
0.284
0.214
0.120
0.094
0.051







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1zo1"(PDB-format) or 
 "1zo1"(mmCIF-format), and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.207024,-0.899017,-0.385889 110.370260 center 0,0,0 model #1
move -0.302578,-31.877889,-126.706538 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1zo1)]

[Download the target GMM(pdb 3izd)]

[Download gmfit result file(4060972)]