Pairwise fitting pdb-3izd on pdb-1x1l by gmfit










Pairwise fitting of target pdb-3izd on reference pdb-1x1l by gmfit(PID:4130908).





RANK[1] Corr.Coeff:0.465

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(pdb-1x1l)

display:



color:


b"INTERACTION OF ERA,A GTPASE PROTEIN, WITH THE 3'MINOR DOMAIN OF THE   " [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.465
0.353
0.296
0.201
0.193
0.148
0.128
0.111
0.094
0.072







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1x1l"(PDB-format) or 
 "1x1l"(mmCIF-format), and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.944776,-0.046160,-0.324448 102.876865 center 0,0,0 model #1
move -111.843038,116.359450,26.917907 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1x1l)]

[Download the target GMM(pdb 3izd)]

[Download gmfit result file(4130908)]