Pairwise fitting pdb-3izd on pdb-1x1l by gmfit



Pairwise fitting of target pdb-3izd on reference pdb-1x1l by gmfit(PID:4114271).

RANK[1] Corr.Coeff:0.465 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(pdb-1x1l)
display:
color:
b"INTERACTION OF ERA,A GTPASE PROTEIN, WITH THE 3'MINOR DOMAIN OF THE " [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.465 0.353 0.296 0.201 0.193 0.148 0.128 0.111 0.094 0.072

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1x1l"(PDB-format) or "1x1l"(mmCIF-format), and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.944776,-0.046160,-0.324448 102.876865 center 0,0,0 model #1
    move -111.843038,116.359450,26.917907 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 1x1l)] [Download the target GMM(pdb 3izd)] [Download gmfit result file(4114271)]