Pairwise fitting pdb-3izd on pdb-1ucu by gmfit










Pairwise fitting of target pdb-3izd on reference pdb-1ucu by gmfit(PID:34332).





RANK[1] Corr.Coeff:0.460

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(pdb-1ucu)

display:



color:


b'R-TYPE STRAIGHT FLAGELLAR FILAMENT MADE OF FULL-LENGTH FLAGELLIN      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.460
0.364
0.289
0.215
0.197
0.164
0.126
0.099
0.095
0.085







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1ucu"(PDB-format) or 
 "1ucu"(mmCIF-format), and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.019523,-0.942244,0.334359 167.149447 center 0,0,0 model #1
move 151.822586,-50.448789,38.102045 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1ucu)]

[Download the target GMM(pdb 3izd)]

[Download gmfit result file(34332)]