Pairwise fitting pdb-3izd on emdb-6138 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-6138 by gmfit(PID:4088606).





RANK[1] Corr.Coeff:0.298

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-6138)

display:



color:


Negative stain random conical tilt reconstructions of E. coli ribosomal 30S subunit assembly intermediates [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.298
0.280
0.279
0.274
0.228
0.200
0.181
0.157
0.118
0.109







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6138.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.357938,-0.840719,0.406291 165.249001 center 0,0,0 model #1
move 283.324922,184.555851,313.007510 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 6138)]

[Download the target GMM(pdb 3izd)]

[Download gmfit result file(4088606)]