Pairwise fitting pdb-3izd on emdb-6135 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-6135 by gmfit(PID:1236953).





RANK[1] Corr.Coeff:0.298

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-6135)

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Negative stain random conical tilt reconstructions of E. coli ribosomal 30S subunit assembly intermediates [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.298
0.274
0.267
0.226
0.195
0.193
0.187
0.132
0.109
0.108







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6135.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.852197,-0.078644,0.517277 142.321739 center 0,0,0 model #1
move 183.337440,288.833854,158.799213 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!