Pairwise fitting pdb-3izd on emdb-5498 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-5498 by gmfit(PID:4107781).





RANK[1] Corr.Coeff:0.349

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-5498)

display:



color:


Structure of ABCA4, the photoreceptor-specific ATP-binding cassette transporter, in complex with AMPPNP [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.349
0.325
0.320
0.294
0.285
0.185
0.168
0.168
0.161
0.156







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5498.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.754728,0.052630,0.653924 120.396694 center 0,0,0 model #1
move 106.819089,150.290461,39.120719 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5498)]

[Download the target GMM(pdb 3izd)]

[Download gmfit result file(4107781)]