Pairwise fitting pdb-3izd on emdb-5168 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-5168 by gmfit(PID:491621).





RANK[1] Corr.Coeff:0.300

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-5168)

display:



color:


Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.300
0.292
0.271
0.226
0.214
0.205
0.173
0.162
0.126
0.095







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5168.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.682802,-0.729112,0.046650 111.833090 center 0,0,0 model #1
move -25.442444,-107.627753,-17.244245 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!