Pairwise fitting pdb-3izd on emdb-2263 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-2263 by gmfit(PID:4191012).





RANK[1] Corr.Coeff:0.384

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-2263)

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negative stain single-particle reconstruction of conformation XVI of the Ltn1 E3 ubiquitin Ligase [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.384
0.321
0.304
0.288
0.253
0.223
0.213
0.205
0.122
0.104







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2263.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.855044,-0.494263,-0.156856 127.016752 center 0,0,0 model #1
move 165.232145,280.601685,143.150639 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2263)]

[Download the target GMM(pdb 3izd)]

[Download gmfit result file(4191012)]