Pairwise fitting pdb-3izd on emdb-2261 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-2261 by gmfit(PID:4096651).

RANK[1] Corr.Coeff:0.361 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-2261)
display:
color:
negative stain single-particle reconstruction of conformation XIV of the Ltn1 E3 ubiquitin Ligase [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.361 0.332 0.284 0.250 0.227 0.139 0.121 0.115 0.111 0.092

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2261.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.849806,-0.116941,0.513960 81.844770 center 0,0,0 model #1
    move 133.816024,81.629386,223.944300 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2261)] [Download the target GMM(pdb 3izd)] [Download gmfit result file(4096651)]