Pairwise fitting pdb-3izd on emdb-2259 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-2259 by gmfit(PID:16699).





RANK[1] Corr.Coeff:0.356

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-2259)

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negative stain single-particle reconstruction of conformation XII of the Ltn1 E3 ubiquitin Ligase [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.356
0.321
0.314
0.301
0.235
0.158
0.144
0.136
0.129
0.111







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2259.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.905377,0.026660,0.423771 99.074582 center 0,0,0 model #1
move 134.272863,108.553337,256.427929 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2259)]

[Download the target GMM(pdb 3izd)]

[Download gmfit result file(16699)]