Pairwise fitting pdb-3izd on emdb-2255 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-2255 by gmfit(PID:4094563).

RANK[1] Corr.Coeff:0.451 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-2255)
display:
color:
negative stain single-particle reconstruction of conformation VIII of the Ltn1 E3 ubiquitin Ligase [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.451 0.312 0.297 0.269 0.192 0.164 0.143 0.141 0.137 0.126

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2255.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.797014,-0.133849,0.588942 96.841347 center 0,0,0 model #1
    move 161.492618,89.880283,241.397691 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2255)] [Download the target GMM(pdb 3izd)] [Download gmfit result file(4094563)]