Pairwise fitting pdb-3izd on emdb-2249 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-2249 by gmfit(PID:284840).





RANK[1] Corr.Coeff:0.440

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-2249)

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negative stain single-particle reconstruction of conformation II of the Ltn1 E3 ubiquitin Ligase [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.440
0.283
0.261
0.256
0.226
0.219
0.169
0.155
0.104
0.048







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2249.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.725173,-0.132115,0.675773 86.557834 center 0,0,0 model #1
move -5.615433,-82.192813,48.181917 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!