Pairwise fitting pdb-3izd on emdb-2214 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-2214 by gmfit(PID:4058648).

RANK[1] Corr.Coeff:0.476 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-2214)
display:
color:
DOLORS: Versatile Strategy for Internal Labeling and Domain Localization in Electron Microscopy [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.476 0.369 0.291 0.286 0.254 0.172 0.158 0.119 0.092 0.074

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2214.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.419417,-0.376498,0.826038 135.010714 center 0,0,0 model #1
    move 209.115872,91.012901,175.610696 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2214)] [Download the target GMM(pdb 3izd)] [Download gmfit result file(4058648)]