Pairwise fitting pdb-3izd on emdb-1980 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-1980 by gmfit(PID:872544).

RANK[1] Corr.Coeff:0.327 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-1980)
display:
color:
CryoEM map of ParM filament at 7.2 Angstrom resolution [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.327 0.265 0.233 0.219 0.183 0.182 0.181 0.176 0.103 0.099

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1980.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.473066,0.333777,0.815354 155.984093 center 0,0,0 model #1
    move 98.909694,2.419562,54.584849 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 1980)] [Download the target GMM(pdb 3izd)] [Download gmfit result file(872544)]