Pairwise fitting pdb-3izd on emdb-1249 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-1249 by gmfit(PID:4127071).

RANK[1] Corr.Coeff:0.365 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-1249)
display:
color:
The cryo-EM structure of a translation initiation complex from Escherichia coli. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.365 0.354 0.340 0.332 0.322 0.144 0.097 0.061 0.032 0.030

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1249.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.705205,0.612315,-0.357431 131.330958 center 0,0,0 model #1
    move -63.356254,99.166574,35.135120 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 1249)] [Download the target GMM(pdb 3izd)] [Download gmfit result file(4127071)]