Pairwise fitting pdb-3gzu on pdb-3j2w by gmfit










Pairwise fitting of target pdb-3gzu on reference pdb-3j2w by gmfit(PID:40539).





RANK[1] Corr.Coeff:0.467

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3gzu)

display:



color:



b'VP7 RECOATED ROTAVIRUS DLP                                            ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3gzu)]







REFERENCE(pdb-3j2w)

display:



color:


b'ELECTRON CRYO-MICROSCOPY OF CHIKUNGUNYA VIRUS                         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.467
0.412
0.405
0.391
0.387
0.374
0.367
0.367
0.362
0.360







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j2w"(PDB-format) or 
 "3j2w"(mmCIF-format), and read it.

  2.  Download the Target molecule "3gzu"(PDB-format) or
  "3gzu"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.605199,-0.717092,-0.345706 79.024718 center 0,0,0 model #1
move -42.431989,-205.182367,202.809972 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j2w)]

[Download the target GMM(pdb 3gzu)]

[Download gmfit result file(40539)]