Pairwise fitting pdb-3gzu on pdb-3iyl by gmfit










Pairwise fitting of target pdb-3gzu on reference pdb-3iyl by gmfit(PID:365900).





RANK[1] Corr.Coeff:0.627

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3gzu)

display:



color:



b'VP7 RECOATED ROTAVIRUS DLP                                            ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3gzu)]







REFERENCE(pdb-3iyl)

display:



color:


b'ATOMIC CRYOEM STRUCTURE OF A NONENVELOPED VIRUS SUGGESTS HOW MEMBRANE ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.627
0.499
0.482
0.481
0.474
0.448
0.447
0.442
0.433
0.427







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3iyl"(PDB-format) or 
 "3iyl"(mmCIF-format), and read it.

  2.  Download the Target molecule "3gzu"(PDB-format) or
  "3gzu"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.380678,-0.512373,-0.769778 174.736912 center 0,0,0 model #1
move -46.832471,-2.440141,46.337251 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3iyl)]

[Download the target GMM(pdb 3gzu)]

[Download gmfit result file(365900)]