Pairwise fitting pdb-3gzu on pdb-3iyl by gmfit



Pairwise fitting of target pdb-3gzu on reference pdb-3iyl by gmfit(PID:4101768).

RANK[1] Corr.Coeff:0.627 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(pdb-3iyl)
display:
color:
b'ATOMIC CRYOEM STRUCTURE OF A NONENVELOPED VIRUS SUGGESTS HOW MEMBRANE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.627 0.499 0.482 0.481 0.474 0.448 0.447 0.442 0.433 0.427

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3iyl"(PDB-format) or "3iyl"(mmCIF-format), and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.380678,-0.512373,-0.769778 174.736912 center 0,0,0 model #1
    move -46.832471,-2.440141,46.337251 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3iyl)] [Download the target GMM(pdb 3gzu)] [Download gmfit result file(4101768)]