Pairwise fitting pdb-3gzu on pdb-1gw8 by gmfit



Pairwise fitting of target pdb-3gzu on reference pdb-1gw8 by gmfit(PID:4096975).

RANK[1] Corr.Coeff:0.551 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(pdb-1gw8)
display:
color:
b'QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 SUS607 MUTANT, ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.551 0.535 0.499 0.484 0.484 0.480 0.475 0.471 0.471 0.449

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1gw8"(PDB-format) or "1gw8"(mmCIF-format), and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.158176,-0.591918,0.790325 73.296891 center 0,0,0 model #1
    move 261.012652,-333.492301,153.337250 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 1gw8)] [Download the target GMM(pdb 3gzu)] [Download gmfit result file(4096975)]