Pairwise fitting pdb-3gzu on emdb-5791 by gmfit










Pairwise fitting of target pdb-3gzu on reference emdb-5791 by gmfit(PID:6861).





RANK[1] Corr.Coeff:0.532

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3gzu)

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b'VP7 RECOATED ROTAVIRUS DLP                                            ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3gzu)]







REFERENCE(emdb-5791)

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Cryo-electron microscopy of an immature 50S ribosomal subunit (45S particle) from Bacillus subtilis depleted of RbgA (YlqF), conformation 3 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.532
0.507
0.497
0.461
0.460
0.456
0.445
0.444
0.441
0.412







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5791.map.gz", and read it.

  2.  Download the Target molecule "3gzu"(PDB-format) or
  "3gzu"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.267562,0.105761,-0.957719 123.074905 center 0,0,0 model #1
move 67.545244,395.565734,52.360748 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5791)]

[Download the target GMM(pdb 3gzu)]

[Download gmfit result file(6861)]