Pairwise fitting pdb-3gzu on emdb-5578 by gmfit



Pairwise fitting of target pdb-3gzu on reference emdb-5578 by gmfit(PID:4096739).

RANK[1] Corr.Coeff:0.104 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(emdb-5578)
display:
color:
Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab 9.8B [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.104 0.009 0.009 0.009 0.009 0.008 0.008 0.008 0.008 0.008

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5578.map.gz", and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.475150,-0.518763,0.710716 111.108763 center 0,0,0 model #1
    move 186.884316,-64.185952,-46.794364 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 5578)] [Download the target GMM(pdb 3gzu)] [Download gmfit result file(4096739)]