Pairwise fitting pdb-3gzu on emdb-2664 by gmfit










Pairwise fitting of target pdb-3gzu on reference emdb-2664 by gmfit(PID:4101898).





RANK[1] Corr.Coeff:0.536

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3gzu)

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b'VP7 RECOATED ROTAVIRUS DLP                                            ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3gzu)]







REFERENCE(emdb-2664)

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Structure of SMG1C-UPF1 complex, comprising SMG1 kinase, SMG8, SMG9 and UPF1 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.536
0.528
0.461
0.436
0.435
0.412
0.398
0.392
0.391
0.389







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2664.map.gz", and read it.

  2.  Download the Target molecule "3gzu"(PDB-format) or
  "3gzu"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.782092,0.365329,-0.504843 171.691951 center 0,0,0 model #1
move -64.981163,255.399174,112.639551 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2664)]

[Download the target GMM(pdb 3gzu)]

[Download gmfit result file(4101898)]