Pairwise fitting pdb-3gzu on emdb-2664 by gmfit



Pairwise fitting of target pdb-3gzu on reference emdb-2664 by gmfit(PID:4101898).

RANK[1] Corr.Coeff:0.536 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(emdb-2664)
display:
color:
Structure of SMG1C-UPF1 complex, comprising SMG1 kinase, SMG8, SMG9 and UPF1 [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.536 0.528 0.461 0.436 0.435 0.412 0.398 0.392 0.391 0.389

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2664.map.gz", and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.782092,0.365329,-0.504843 171.691951 center 0,0,0 model #1
    move -64.981163,255.399174,112.639551 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2664)] [Download the target GMM(pdb 3gzu)] [Download gmfit result file(4101898)]