Pairwise fitting pdb-3gzu on emdb-2307 by gmfit



Pairwise fitting of target pdb-3gzu on reference emdb-2307 by gmfit(PID:4111897).

RANK[1] Corr.Coeff:0.444 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(emdb-2307)
display:
color:
Structural visualization of key steps in human transcription initiation [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.444 0.429 0.428 0.412 0.397 0.395 0.379 0.379 0.370 0.368

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2307.map.gz", and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.568418,0.765170,0.302351 139.597188 center 0,0,0 model #1
    move -13.964177,49.345806,149.957187 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2307)] [Download the target GMM(pdb 3gzu)] [Download gmfit result file(4111897)]