Pairwise fitting pdb-3gzu on emdb-2304 by gmfit



Pairwise fitting of target pdb-3gzu on reference emdb-2304 by gmfit(PID:4099821).

RANK[1] Corr.Coeff:0.421 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(emdb-2304)
display:
color:
Structural visualization of key steps in human transcription initiation [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.421 0.388 0.369 0.367 0.362 0.350 0.342 0.335 0.330 0.323

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2304.map.gz", and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.551523,0.798415,0.241571 141.206770 center 0,0,0 model #1
    move -29.065542,50.092760,190.022290 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2304)] [Download the target GMM(pdb 3gzu)] [Download gmfit result file(4099821)]