Pairwise fitting pdb-3gzu on emdb-2174 by gmfit



Pairwise fitting of target pdb-3gzu on reference emdb-2174 by gmfit(PID:4089898).

RANK[1] Corr.Coeff:0.380 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(emdb-2174)
display:
color:
Negative stain electron microscopy of a CSN-SCF~Nedd8/Fbw7 complex [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.380 0.379 0.363 0.356 0.348 0.332 0.316 0.296 0.291 0.282

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2174.map.gz", and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.310775,-0.944811,-0.103691 120.037685 center 0,0,0 model #1
    move 251.717648,-114.543803,-86.217110 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2174)] [Download the target GMM(pdb 3gzu)] [Download gmfit result file(4089898)]