Pairwise fitting pdb-3gzu on emdb-1727 by gmfit



Pairwise fitting of target pdb-3gzu on reference emdb-1727 by gmfit(PID:4096038).

RANK[1] Corr.Coeff:0.579 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(emdb-1727)
display:
color:
Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.579 0.562 0.557 0.545 0.539 0.529 0.527 0.522 0.508 0.504

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1727.map.gz", and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.506843,0.637954,0.579763 110.169252 center 0,0,0 model #1
    move 382.684739,-5.323670,249.989934 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 1727)] [Download the target GMM(pdb 3gzu)] [Download gmfit result file(4096038)]