Pairwise fitting pdb-3dg5 on pdb-5kpv by gmfit










Pairwise fitting of target pdb-3dg5 on reference pdb-5kpv by gmfit(PID:4114204).





RANK[1] Corr.Coeff:0.862

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(pdb-5kpv)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.862
0.853
0.776
0.756
0.748
0.731
0.727
0.719
0.715
0.715







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5kpv"(PDB-format) or 
 "5kpv"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.560956,0.619233,-0.549435 7.790005 center 0,0,0 model #1
move 187.358608,196.840011,190.679193 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5kpv)]

[Download the target GMM(pdb 3dg5)]

[Download gmfit result file(4114204)]