Pairwise fitting pdb-3dg5 on pdb-4v6l by gmfit



Pairwise fitting of target pdb-3dg5 on reference pdb-4v6l by gmfit(PID:4113169).

RANK[1] Corr.Coeff:0.868 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(pdb-4v6l)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.868 0.748 0.745 0.714 0.711 0.709 0.703 0.702 0.682 0.676

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v6l"(PDB-format) or "4v6l"(mmCIF-format), and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.941448,-0.332291,-0.057083 6.662400 center 0,0,0 model #1
    move -8.227536,-0.233415,-4.893447 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v6l)] [Download the target GMM(pdb 3dg5)] [Download gmfit result file(4113169)]