Pairwise fitting pdb-3dg5 on pdb-4v6k by gmfit










Pairwise fitting of target pdb-3dg5 on reference pdb-4v6k by gmfit(PID:4060254).





RANK[1] Corr.Coeff:0.850

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(pdb-4v6k)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.850
0.743
0.738
0.726
0.726
0.710
0.707
0.701
0.697
0.693







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v6k"(PDB-format) or 
 "4v6k"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.920649,0.157239,-0.357326 5.236788 center 0,0,0 model #1
move -8.920273,-0.095268,-4.639842 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v6k)]

[Download the target GMM(pdb 3dg5)]

[Download gmfit result file(4060254)]