Pairwise fitting pdb-3dg5 on pdb-4v4b by gmfit










Pairwise fitting of target pdb-3dg5 on reference pdb-4v4b by gmfit(PID:4094232).





RANK[1] Corr.Coeff:0.833

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(pdb-4v4b)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.833
0.763
0.734
0.728
0.724
0.713
0.692
0.691
0.672
0.672







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v4b"(PDB-format) or 
 "4v4b"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.699158,0.669290,0.251452 6.088636 center 0,0,0 model #1
move -8.425977,-4.847435,-7.257957 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v4b)]

[Download the target GMM(pdb 3dg5)]

[Download gmfit result file(4094232)]