Pairwise fitting pdb-3dg5 on pdb-3j9y by gmfit










Pairwise fitting of target pdb-3dg5 on reference pdb-3j9y by gmfit(PID:4166520).





RANK[1] Corr.Coeff:0.866

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(pdb-3j9y)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.866
0.839
0.833
0.764
0.744
0.734
0.721
0.715
0.709
0.707







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j9y"(PDB-format) or 
 "3j9y"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.686471,-0.725976,0.041429 178.838415 center 0,0,0 model #1
move 193.344681,177.448580,195.321751 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j9y)]

[Download the target GMM(pdb 3dg5)]

[Download gmfit result file(4166520)]