Pairwise fitting pdb-3dg5 on pdb-3dg2 by gmfit










Pairwise fitting of target pdb-3dg5 on reference pdb-3dg2 by gmfit(PID:632417).





RANK[1] Corr.Coeff:0.976

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(pdb-3dg2)

display:



color:


b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF A     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.976
0.738
0.732
0.713
0.704
0.688
0.687
0.673
0.655
0.650







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3dg2"(PDB-format) or 
 "3dg2"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.775798,-0.582292,-0.243050 0.614432 center 0,0,0 model #1
move -1.781470,0.909718,-2.315103 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!