Pairwise fitting pdb-3dg5 on emdb-6550 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-6550 by gmfit(PID:4089920).





RANK[1] Corr.Coeff:0.904

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-6550)

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color:


Cryo-EM map of EF4-bound ribosomal complexe [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.904
0.762
0.736
0.723
0.722
0.696
0.687
0.683
0.679
0.673







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6550.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.763019,-0.367542,0.531709 62.032867 center 0,0,0 model #1
move 212.300913,207.809693,210.341025 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 6550)]

[Download the target GMM(pdb 3dg5)]

[Download gmfit result file(4089920)]