Pairwise fitting pdb-3dg5 on emdb-5775 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-5775 by gmfit(PID:16334).





RANK[1] Corr.Coeff:0.885

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-5775)

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Cryo-EM reconstruction of a authentic 70S-tRNA2-mRNA-EF-G translocation intermediate [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.885
0.746
0.719
0.695
0.694
0.678
0.673
0.666
0.663
0.658







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5775.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.312758,-0.874084,0.371700 2.075455 center 0,0,0 model #1
move -3.316881,-1.748008,-9.206963 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5775)]

[Download the target GMM(pdb 3dg5)]

[Download gmfit result file(16334)]