Pairwise fitting pdb-3dg5 on emdb-2705 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-2705 by gmfit(PID:266710).





RANK[1] Corr.Coeff:0.897

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-2705)

display:



color:


A structural model of the active ribosome-bound membrane protein insertase YidC [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.897
0.730
0.715
0.712
0.676
0.672
0.671
0.665
0.662
0.648







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2705.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.683245,-0.729877,0.021365 177.665431 center 0,0,0 model #1
move -5.869711,-3.889852,5.531659 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!