Pairwise fitting pdb-3dg5 on emdb-1315 by gmfit



Pairwise fitting of target pdb-3dg5 on reference emdb-1315 by gmfit(PID:4114252).

RANK[1] Corr.Coeff:0.794 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(emdb-1315)
display:
color:
Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.794 0.749 0.708 0.698 0.691 0.675 0.672 0.667 0.661 0.655

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1315.map.gz", and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.082808,0.139951,0.986690 176.042900 center 0,0,0 model #1
    move 2.764888,2.111837,-2.454636 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 1315)] [Download the target GMM(pdb 3dg5)] [Download gmfit result file(4114252)]