Pairwise fitting pdb-3dg5 on emdb-1262 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-1262 by gmfit(PID:4171010).





RANK[1] Corr.Coeff:0.772

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-1262)

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Following the signal sequence from ribosomal tunnel exit to signal recognition particle. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.772
0.716
0.709
0.681
0.666
0.663
0.642
0.636
0.616
0.615







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1262.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.031676,0.099556,0.994528 175.407237 center 0,0,0 model #1
move 5.652792,2.635063,-4.866147 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1262)]

[Download the target GMM(pdb 3dg5)]

[Download gmfit result file(4171010)]