Pairwise fitting pdb-3dg4 on pdb-4v91 by gmfit










Pairwise fitting of target pdb-3dg4 on reference pdb-4v91 by gmfit(PID:4107665).





RANK[1] Corr.Coeff:0.786

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(pdb-4v91)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.786
0.785
0.781
0.762
0.761
0.746
0.738
0.718
0.715
0.707







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v91"(PDB-format) or 
 "4v91"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.627762,-0.407526,-0.663202 161.241334 center 0,0,0 model #1
move 256.370994,190.265127,218.917078 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v91)]

[Download the target GMM(pdb 3dg4)]

[Download gmfit result file(4107665)]