Pairwise fitting pdb-3dg4 on pdb-4v6l by gmfit










Pairwise fitting of target pdb-3dg4 on reference pdb-4v6l by gmfit(PID:447357).





RANK[1] Corr.Coeff:0.873

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(pdb-4v6l)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.873
0.743
0.737
0.720
0.714
0.713
0.705
0.702
0.698
0.687







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v6l"(PDB-format) or 
 "4v6l"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.949545,-0.234880,0.207838 4.737531 center 0,0,0 model #1
move -9.319894,-0.438544,-4.135560 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!