Pairwise fitting pdb-3dg4 on pdb-4v5h by gmfit



Pairwise fitting of target pdb-3dg4 on reference pdb-4v5h by gmfit(PID:4114673).

RANK[1] Corr.Coeff:0.890 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(pdb-4v5h)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.890 0.886 0.826 0.756 0.748 0.725 0.715 0.700 0.699 0.685

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v5h"(PDB-format) or "4v5h"(mmCIF-format), and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.979814,0.192878,-0.052563 3.587412 center 0,0,0 model #1
    move -7.092793,-0.294818,-2.903534 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v5h)] [Download the target GMM(pdb 3dg4)] [Download gmfit result file(4114673)]