Pairwise fitting pdb-3dg4 on pdb-4v5h by gmfit










Pairwise fitting of target pdb-3dg4 on reference pdb-4v5h by gmfit(PID:4114673).





RANK[1] Corr.Coeff:0.890

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(pdb-4v5h)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.890
0.886
0.826
0.756
0.748
0.725
0.715
0.700
0.699
0.685







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v5h"(PDB-format) or 
 "4v5h"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.979814,0.192878,-0.052563 3.587412 center 0,0,0 model #1
move -7.092793,-0.294818,-2.903534 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v5h)]

[Download the target GMM(pdb 3dg4)]

[Download gmfit result file(4114673)]